Although more and more running shoe manufacturers have succumbed to the "barefoot" craze, there are still plenty of shoes around that provide anti-pronation support and motion control. You do have to find an aftermarket insole that works for you. I think the shoe manufacturers have realized that most people do buy after-market insoles, so they just use a piece of flat foam in their shoes.

Fortunately some of the road running shoes are providing more traction in their soles so they can be used on trails. New Balance is an example. I get a perfect fit (for me!) with their SL-2 last--wide and high toe box, narrower heel, thick through the arch. Unfortunately none of their trail runners use this last.