MSR Hubba NX and Big Agnes Copper Spur 1 (two models?) can be pitched inner first. They're not specifically designed for it, so it's a little awkward to clip the inner to the poles, but it can be done. I share the same concern about a wet inner.
By the way, the poles-and-fly quick-pitch option with both allow you to put up a lunch shelter on a rainy day, too.